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Conference Paper
The URGI bioinformatic platform: focus on genomic annotation databases and tools, Alaux, M., Quesneville H., Steinbach Samson D., Luyten I., Amselem J., Pommier C., and Kimmel E. , PAG XVII, 01/2009, San Diego, USA, (2009)
Conference Proceedings
The Apollo Genome Annotation Curation Tool (invited speaker), Amselem, J. , 3rd Tuber Genome Consortium Workshop, 27-28 November 2, University of Parma – Centro Congressi Santa Elisabetta, (2008)
The fungal genomic annotation platform, Amselem, J. , 3rd Botrytis Genome Workshop, 25-27 September , Tenerife, Canary Islands, Spain, (2008)
GnpAnnot Project 2008, Sidibe Bocs, S., Droc G., Ruiz M., Rouard M., Roux N., Alaux M., Steinbach Samson D., Kimmel E., Pommier C., Luyten I., et al. , Séminaire Génoplante, 1-3 April 2008, Maeva, Arles, France , (2008)
Leptosphaeria maculans genome annotation: cDNAs databases and interfaces, Amselem, J. , Leptosphaeria 1st workshop, 1 September 2008, INRA Versailles, (2008)
Journal Article
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants., D'Hont, Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noel Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, et al. , Nature, 2012 Aug 9, Volume 488, Issue 7410, p.213-7, (2012) Abstract
The banana genome hub., Droc, Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, et al. , Database : the journal of biological databases and curation, 2013, Volume 2013, p.bat035, (2013) Abstract
Chado controller: advanced annotation management with a community annotation system., Guignon, Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Tim, Rouard Mathieu, and Bocs Stéphanie , Bioinformatics (Oxford, England), 2012 Apr 1, Volume 28, Issue 7, p.1054-6, (2012) Abstract
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations., Rouxel, Thierry, Grandaubert Jonathan, Hane James K., Hoede Claire, van de Wouw Angela P., Couloux Arnaud, Dominguez Victoria, Anthouard Véronique, Bally Pascal, Bourras Salim, et al. , Nature communications, 2011, Volume 2, p.202, (2011) Abstract
The genome of Theobroma cacao., Argout, Xavier, Salse Jerome, Aury Jean-Marc, Guiltinan Mark J., Droc Gaetan, Gouzy Jerome, Allegre Mathilde, Chaparro Cristian, Legavre Thierry, Maximova Siela N., et al. , Nature genetics, 2011 Feb, Volume 43, Issue 2, p.101-8, (2011) Abstract
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea., Amselem, Joelle, Cuomo Christina A., van Kan Jan A. L., Viaud Muriel, Benito Ernesto P., Couloux Arnaud, Coutinho Pedro M., de Vries Ronald P., Dyer Paul S., Fillinger Sabine, et al. , PLoS genetics, 2011 Aug, Volume 7, Issue 8, p.e1002230, (2011) Abstract
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes., Leroy, Philippe, Guilhot Nicolas, Sakai Hiroaki, Bernard Aurélien, Choulet Frédéric, Theil Sébastien, Reboux Sébastien, Amano Naoki, Flutre Timothée, Pelegrin Céline, et al. , Frontiers in plant science, 2012, Volume 3, p.5, (2012) Abstract
Miscellaneous
GNPAnnot Community Annotation System: features, qualifiers, values, Bocs, Stéphanie Sidibe, Quesneville Hadi, Tagu Denis, Lebrun Marc-Henri, Samson Delphine Steinbach, Hoede Claire, Simon Adeline, Guignon Valentin, Poiron Claire, Garsmeur Olivier, et al. , Biocuratot Meeting, (2009)
Web Article
The fungal genomics platform, Amselem, J. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
Systemes d'annotation GnpGenome / TriAnnot, Alaux, M. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)