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2013
Three Infectious Viral Species Lying in Wait in the Banana Genome., Chabannes, Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, and Iskra-Caruana Marie-Line , Journal of virology, 2013 May 29, (2013) Abstract
The banana genome hub., Droc, Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, et al. , Database : the journal of biological databases and curation, 2013, Volume 2013, p.bat035, (2013) Abstract
2012
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants., D'Hont, Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noel Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, et al. , Nature, 2012 Aug 9, Volume 488, Issue 7410, p.213-7, (2012) Abstract
Chado controller: advanced annotation management with a community annotation system., Guignon, Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Tim, Rouard Mathieu, and Bocs Stéphanie , Bioinformatics (Oxford, England), 2012 Apr 1, Volume 28, Issue 7, p.1054-6, (2012) Abstract
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes., Leroy, Philippe, Guilhot Nicolas, Sakai Hiroaki, Bernard Aurélien, Choulet Frédéric, Theil Sébastien, Reboux Sébastien, Amano Naoki, Flutre Timothée, Pelegrin Céline, et al. , Frontiers in plant science, 2012, Volume 3, p.5, (2012) Abstract
2011
High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane., Garsmeur, Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, et al. , The New phytologist, 2011 Jan, Volume 189, Issue 2, p.629-42, (2011) Abstract
The genome of Theobroma cacao., Argout, Xavier, Salse Jerome, Aury Jean-Marc, Guiltinan Mark J., Droc Gaetan, Gouzy Jerome, Allegre Mathilde, Chaparro Cristian, Legavre Thierry, Maximova Siela N., et al. , Nature genetics, 2011 Feb, Volume 43, Issue 2, p.101-8, (2011) Abstract
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea., Amselem, Joelle, Cuomo Christina A., van Kan Jan A. L., Viaud Muriel, Benito Ernesto P., Couloux Arnaud, Coutinho Pedro M., de Vries Ronald P., Dyer Paul S., Fillinger Sabine, et al. , PLoS genetics, 2011 Aug, Volume 7, Issue 8, p.e1002230, (2011) Abstract
Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda., Stanojcic, Slavica, Gimenez Sylvie, Permal Emmanuelle, Cousserans François, Quesneville Hadi, Fournier Philippe, and d'Alençon Emmanuelle , PloS one, 2011, Volume 6, Issue 9, p.e24746, (2011) Abstract
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations., Rouxel, Thierry, Grandaubert Jonathan, Hane James K., Hoede Claire, van de Wouw Angela P., Couloux Arnaud, Dominguez Victoria, Anthouard Véronique, Bally Pascal, Bourras Salim, et al. , Nature communications, 2011, Volume 2, p.202, (2011) Abstract
2010
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome., Legeai, F., Shigenobu S., Gauthier J. - P., Colbourne J., Rispe C., Collin O., Richards S., Wilson A. C. C., Murphy T., and Tagu D. , Insect molecular biology, 2010 Mar, Volume 19 Suppl 2, p.5-12, (2010) Abstract
Genome sequence of the pea aphid Acyrthosiphon pisum., , PLoS biology, 2010 Feb, Volume 8, Issue 2, p.e1000313, (2010) Abstract
Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements., d'Alençon, E., Sezutsu H., Legeai F., Permal E., Bernard-Samain S., Gimenez S., Gagneur C., Cousserans F., Shimomura M., Brun-Barale A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2010 Apr 27, Volume 107, Issue 17, p.7680-5, (2010) Abstract
Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana)., Baurens, Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Robert N. G., Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, and Yahiaoui Nabila , BMC plant biology, 2010, Volume 10, p.149, (2010) Abstract
2009
Oral communication: Harnessing information produced by Musa genome sequencing efforts, Rouard, M. , KUL meeting, 26 January 2009, Leuven University, Leuven, Belgium, (2009)
Oral communication: GNPAnnot - A community annotation system (CAS) for plant and bio- aggressor genomes supported by comparative genomics, Droc, G. , NGS (next generation sequencing) data analysis, 21-23 July 2009, ICRISAT, Hyderabad, India, (2009)
Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop., Mbéguié-A-Mbéguié, D., Hubert O., Baurens F. C., Matsumoto T., Chillet M., Fils-Lycaon B., and Sidibé-Bocs S. , Journal of experimental botany, 2009, Volume 60, Issue 7, p.2021-34, (2009) Abstract
The URGI bioinformatic platform: focus on genomic annotation databases and tools, Alaux, M., Quesneville H., Steinbach Samson D., Luyten I., Amselem J., Pommier C., and Kimmel E. , PAG XVII, 01/2009, San Diego, USA, (2009)
GNPAnnot Community Annotation System: features, qualifiers, values, Bocs, Stéphanie Sidibe, Quesneville Hadi, Tagu Denis, Lebrun Marc-Henri, Samson Delphine Steinbach, Hoede Claire, Simon Adeline, Guignon Valentin, Poiron Claire, Garsmeur Olivier, et al. , Biocuratot Meeting, (2009)
2008
The Apollo Genome Annotation Curation Tool (invited speaker), Amselem, J. , 3rd Tuber Genome Consortium Workshop, 27-28 November 2, University of Parma – Centro Congressi Santa Elisabetta, (2008)
The fungal genomics platform, Amselem, J. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
Plateforme génomique des insectes, Legeai, F. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
South Green genetics & genomics, Sidibe Bocs, S. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
Systemes d'annotation GnpGenome / TriAnnot, Alaux, M. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
The fungal genomic annotation platform, Amselem, J. , 3rd Botrytis Genome Workshop, 25-27 September , Tenerife, Canary Islands, Spain, (2008)