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Conference Paper
The URGI bioinformatic platform: focus on genomic annotation databases and tools, Alaux, M., Quesneville H., Steinbach Samson D., Luyten I., Amselem J., Pommier C., and Kimmel E. , PAG XVII, 01/2009, San Diego, USA, (2009)
Conference Proceedings
Comparative genomics and database construction for Lepidoptera , d'Alençon, E., Sezutsu H., Legeai F., Quesneville H., Gordon K., Samain S., Gagneur C., Gimenez S., Cousserans F., Flutre T., et al. , 2nd Annual Arthropod Genomics Symposium, 11-13 April 2008, Kansas City, Downtown Marriott, (2008) Abstract
GnpAnnot Project 2008, Sidibe Bocs, S., Droc G., Ruiz M., Rouard M., Roux N., Alaux M., Steinbach Samson D., Kimmel E., Pommier C., Luyten I., et al. , Séminaire Génoplante, 1-3 April 2008, Maeva, Arles, France , (2008)
Journal Article
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome., Legeai, F., Shigenobu S., Gauthier J. - P., Colbourne J., Rispe C., Collin O., Richards S., Wilson A. C. C., Murphy T., and Tagu D. , Insect molecular biology, 2010 Mar, Volume 19 Suppl 2, p.5-12, (2010) Abstract
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants., D'Hont, Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noel Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, et al. , Nature, 2012 Aug 9, Volume 488, Issue 7410, p.213-7, (2012) Abstract
Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda., Stanojcic, Slavica, Gimenez Sylvie, Permal Emmanuelle, Cousserans François, Quesneville Hadi, Fournier Philippe, and d'Alençon Emmanuelle , PloS one, 2011, Volume 6, Issue 9, p.e24746, (2011) Abstract
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations., Rouxel, Thierry, Grandaubert Jonathan, Hane James K., Hoede Claire, van de Wouw Angela P., Couloux Arnaud, Dominguez Victoria, Anthouard Véronique, Bally Pascal, Bourras Salim, et al. , Nature communications, 2011, Volume 2, p.202, (2011) Abstract
Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop., Mbéguié-A-Mbéguié, D., Hubert O., Baurens F. C., Matsumoto T., Chillet M., Fils-Lycaon B., and Sidibé-Bocs S. , Journal of experimental botany, 2009, Volume 60, Issue 7, p.2021-34, (2009) Abstract
Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements., d'Alençon, E., Sezutsu H., Legeai F., Permal E., Bernard-Samain S., Gimenez S., Gagneur C., Cousserans F., Shimomura M., Brun-Barale A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2010 Apr 27, Volume 107, Issue 17, p.7680-5, (2010) Abstract
The genome of Theobroma cacao., Argout, Xavier, Salse Jerome, Aury Jean-Marc, Guiltinan Mark J., Droc Gaetan, Gouzy Jerome, Allegre Mathilde, Chaparro Cristian, Legavre Thierry, Maximova Siela N., et al. , Nature genetics, 2011 Feb, Volume 43, Issue 2, p.101-8, (2011) Abstract
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea., Amselem, Joelle, Cuomo Christina A., van Kan Jan A. L., Viaud Muriel, Benito Ernesto P., Couloux Arnaud, Coutinho Pedro M., de Vries Ronald P., Dyer Paul S., Fillinger Sabine, et al. , PLoS genetics, 2011 Aug, Volume 7, Issue 8, p.e1002230, (2011) Abstract
High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane., Garsmeur, Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, et al. , The New phytologist, 2011 Jan, Volume 189, Issue 2, p.629-42, (2011) Abstract
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes., Leroy, Philippe, Guilhot Nicolas, Sakai Hiroaki, Bernard Aurélien, Choulet Frédéric, Theil Sébastien, Reboux Sébastien, Amano Naoki, Flutre Timothée, Pelegrin Céline, et al. , Frontiers in plant science, 2012, Volume 3, p.5, (2012) Abstract
Miscellaneous
GNPAnnot Community Annotation System: features, qualifiers, values, Bocs, Stéphanie Sidibe, Quesneville Hadi, Tagu Denis, Lebrun Marc-Henri, Samson Delphine Steinbach, Hoede Claire, Simon Adeline, Guignon Valentin, Poiron Claire, Garsmeur Olivier, et al. , Biocuratot Meeting, (2009)
Unpublished
Comparative genomics can help to annotate tropical monocotyledon sequences, Sidibe Bocs, S., Droc G., Guignon V., Garsmeur O., and Baurens F. C. , Master APIMET / SEPMET, 14 November 2008, Montpellier SupAgro, France, (2008)
Web Article
South Green genetics & genomics, Sidibe Bocs, S. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)