1 | man_ms1288_Ma4078I12_Musa_Recon_98_Malign_12:NoCat | Ma4078I12_te010 | 880 | 2713 | 1834 | forward | automatic | Ma4078I12_te010 solo LTR Thalie | |
2 | man_ms1295_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te030 | 2737 | 4173 | 1437 | reverse | automatic | Ma4078I12_te030 | |
3 | man_ms1305_Ma4078I12_Musa_Grouper_115_Malign_11:LARD | Ma4078I12_te040 | 4174 | 5084 | 911 | forward | automatic | Ma4078I12_te040 | |
4 | man_ms1306_Ma4078I12_Musa_Recon_9_Malign_13:LTRuncomp | Ma4078I12_te050 | 5085 | 5113 | 29 | reverse | automatic | Ma4078I12_te050 | |
5 | man_ms1308_Ma4078I12_Musa_Recon_9_Malign_13:LTRuncomp | Ma4078I12_te060 | 5114 | 5613 | 500 | reverse | automatic | Ma4078I12_te060 | |
6 | man_ms1310_Ma4078I12_Musa_Grouper_110_Malign_5:LARD | Ma4078I12_te070 | 5628 | 6475 | 848 | reverse | automatic | Ma4078I12_te070 | |
7 | man_ms1313_Ma4078I12_Musa_Recon_147_Malign_8:LTRuncomp | Ma4078I12_te080 | 6476 | 7422 | 947 | reverse | automatic | Ma4078I12_te080 | |
8 | man_ms1407_Ma4078I12_Musa_Grouper_244_Malign_3:LTRuncomp | Ma4078I12_te090 | 9314 | 20918 | 11605 | reverse | curated | retrotransposon: LTR: Gypsy: RE16: Ma4078I12_te090 | sidibebocs, cpoiron |
9 | man_ms1314_Ma4078I12_Musa_Recon_147_Malign_8:LTRuncomp | Ma4078I12_te100 | 10098 | 12335 | 2238 | forward | curated | Ma4078I12_te100 | cpoiron |
10 | man_ms1330_Ma4078I12_Musa_Recon_169_Malign_4:confused | Ma4078I12_te120 | 20919 | 23581 | 2663 | forward | automatic | Ma4078I12_te120 | |
11 | man_ms1333_Ma4078I12_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4078I12_te140 | 23641 | 32990 | 9350 | reverse | automatic | Ma4078I12_te140 LTR retrotransposon Thalie | |
12 | man_ms1354_Ma4078I12_Musa_Recon_146_Malign_5:LTRcomp | Ma4078I12_te210 | 32995 | 33209 | 215 | reverse | automatic | Ma4078I12_te210 | |
13 | man_ms1361_Ma4078I12_Musa_Grouper_88_Malign_10:LARD | Ma4078I12_te220 | 33210 | 33915 | 706 | reverse | automatic | Ma4078I12_te220 | |
14 | man_ms1323_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te230 | 33923 | 35789 | 1867 | reverse | automatic | Ma4078I12_te230 | |
15 | man_ms1311_Ma4078I12_Musa_Grouper_110_Malign_5:LARD | Ma4078I12_te240 | 35790 | 35972 | 183 | forward | automatic | Ma4078I12_te240 | |
16 | man_ms1355_Ma4078I12_Musa_Recon_146_Malign_5:LTRcomp | Ma4078I12_te250 | 36031 | 36261 | 231 | reverse | automatic | Ma4078I12_te250 | |
17 | man_ms1409_Ma4078I12_Musa_Grouper_244_Malign_3:LTRuncomp | Ma4078I12_te260 | 37146 | 37221 | 76 | forward | automatic | Ma4078I12_te260 | |
18 | man_ms1356_Ma4078I12_Musa_Recon_146_Malign_5:LTRcomp | Ma4078I12_te270 | 37222 | 38837 | 1616 | reverse | automatic | Ma4078I12_te270 | |
19 | man_ms1331_Ma4078I12_Musa_Recon_169_Malign_4:confused | Ma4078I12_te280 | 38838 | 41376 | 2539 | forward | automatic | Ma4078I12_te280 | |
20 | man_ms1369_Ma4078I12_Musa_Grouper_121_Malign_3:LARD | Ma4078I12_te290 | 41449 | 41592 | 144 | forward | automatic | Ma4078I12_te290 | |
21 | man_ms1370_Ma4078I12_Musa_Recon_141_Malign_11:LTRuncomp | Ma4078I12_te300 | 41658 | 41869 | 212 | reverse | automatic | Ma4078I12_te300 | |
22 | man_ms1398_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te310 | 41905 | 42877 | 973 | reverse | automatic | Ma4078I12_te310 | |
23 | man_ms1342_Ma4078I12_Musa_Grouper_237_Malign_3:LTRuncomp | Ma4078I12_te320 | 42878 | 45804 | 2927 | reverse | automatic | Ma4078I12_te320 | |
24 | man_ms1399_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te330 | 45805 | 45924 | 120 | reverse | automatic | Ma4078I12_te330 | |
25 | man_ms1362_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te340 | 45925 | 45991 | 67 | forward | automatic | Ma4078I12_te340 | |
26 | man_ms1296_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te350 | 45992 | 46635 | 644 | reverse | automatic | Ma4078I12_te350 | |
27 | man_ms1297_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te360 | 46636 | 46895 | 260 | reverse | automatic | Ma4078I12_te360 | |
28 | man_ms1373_Ma4078I12_Musa_Grouper_253_Malign_3:LTRuncomp | Ma4078I12_te370 | 46896 | 52171 | 5276 | forward | automatic | Ma4078I12_te370 LTR retrotransposon Thalie (start) | |
29 | man_ms1358_Ma4078I12_Musa_Recon_146_Malign_5:LTRcomp | Ma4078I12_te390 | 52176 | 57437 | 5262 | reverse | curated | Ma4078I12_te390 LTR Retrotransposon Gypsy Muku | cpoiron |
30 | Ma4078I12_te371 | Ma4078I12_te371 | 57438 | 61488 | 4051 | forward | | Ma4078I12_te370 LTR retrotransposon Thalie (end) | |
31 | man_ms1363_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te470 | 61494 | 63730 | 2237 | forward | automatic | Ma4078I12_te470 | |
32 | man_ms1324_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te480 | 61590 | 61649 | 60 | forward | automatic | Ma4078I12_te480 | |
33 | man_ms1325_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te490 | 63731 | 63985 | 255 | forward | automatic | Ma4078I12_te490 | |
34 | man_ms1383_Ma4078I12_Musa_Grouper_239_Malign_3:LARD | Ma4078I12_te500 | 63986 | 64341 | 356 | forward | automatic | Ma4078I12_te500 | |
35 | man_ms1384_Ma4078I12_Musa_Grouper_239_Malign_3:LARD | Ma4078I12_te510 | 64342 | 67147 | 2806 | forward | automatic | Ma4078I12_te510 | |
36 | man_ms1385_Ma4078I12_Musa_Grouper_239_Malign_3:LARD | Ma4078I12_te520 | 67148 | 67221 | 74 | forward | automatic | Ma4078I12_te520 | |
37 | man_ms1326_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te530 | 67222 | 69607 | 2386 | reverse | automatic | Ma4078I12_te530 | |
38 | man_ms1328_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te550 | 69608 | 69655 | 48 | reverse | automatic | Ma4078I12_te550 | |
39 | man_ms1327_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te540 | 69608 | 69655 | 48 | forward | automatic | Ma4078I12_te540 | |
40 | man_ms1371_Ma4078I12_Musa_Recon_141_Malign_11:LTRuncomp | Ma4078I12_te560 | 69656 | 69840 | 185 | reverse | automatic | Ma4078I12_te560 | |
41 | man_ms1388_Ma4078I12_Musa_Grouper_96_Malign_3:LARD | Ma4078I12_te580 | 70943 | 79928 | 8986 | forward | curated | Ma4078I12_te580 LTR retrotransposon unclassified | cpoiron |
42 | man_ms1372_Ma4078I12_Musa_Recon_141_Malign_11:LTRuncomp | Ma4078I12_te640 | 79929 | 80244 | 316 | reverse | automatic | Ma4078I12_te640 | |
43 | man_ms1299_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te650 | 80549 | 81062 | 514 | reverse | automatic | Ma4078I12_te650 | |
44 | man_ms1364_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te660 | 81063 | 86110 | 5048 | forward | automatic | Ma4078I12_te660 | |
45 | man_ms1400_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te670 | 86111 | 86861 | 751 | reverse | automatic | Ma4078I12_te670 | |
46 | man_ms1365_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te680 | 86862 | 86922 | 61 | forward | automatic | Ma4078I12_te680 | |
47 | man_ms1351_Ma4078I12_Musa_Recon_148_Malign_8:LTRuncomp | Ma4078I12_te690 | 87010 | 87099 | 90 | forward | automatic | Ma4078I12_te690 | |
48 | man_ms1329_Ma4078I12_Musa_Grouper_277_Malign_3:confused | Ma4078I12_te700 | 87545 | 88438 | 894 | reverse | automatic | Ma4078I12_te700 | |
49 | man_ms1345_Ma4078I12_Musa_Recon_352_Malign_9:confused | Ma4078I12_te710 | 88541 | 88584 | 44 | reverse | automatic | Ma4078I12_te710 | |
50 | man_ms1346_Ma4078I12_Musa_Recon_352_Malign_9:confused | Ma4078I12_te720 | 88581 | 95545 | 6965 | reverse | curated | Ma4078I12_te720 LTR retrotransposon Circe | cpoiron, fcbaurens |
51 | man_ms1360_Ma4078I12_Musa_Recon_146_Malign_5:LTRcomp | Ma4078I12_te790 | 99916 | 107778 | 7863 | reverse | curated | Ma4078I12_te790 LTR retrotransposon Circe | cpoiron, fcbaurens |
52 | man_ms1320_Ma4078I12_Musa_Recon_147_Malign_8:LTRuncomp | Ma4078I12_te870 | 107779 | 108047 | 269 | reverse | automatic | Ma4078I12_te870 | fcbaurens |
53 | man_ms1395_Ma4078I12_Musa_Grouper_225_Malign_4:LTRuncomp | Ma4078I12_te880 | 108052 | 112343 | 4292 | reverse | automatic | Ma4078I12_te880 | |
54 | man_ms1300_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te890 | 112344 | 114491 | 2148 | reverse | automatic | Ma4078I12_te890 | |
55 | man_ms1301_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te900 | 112638 | 112682 | 45 | reverse | automatic | Ma4078I12_te900 | |
56 | man_ms1302_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te910 | 114166 | 114272 | 107 | reverse | automatic | Ma4078I12_te910 | |
57 | man_ms1303_Ma4078I12_Musa_Recon_354_Malign_5:LTRuncomp | Ma4078I12_te920 | 114492 | 114813 | 322 | forward | automatic | Ma4078I12_te920 | |
58 | man_ms1366_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te930 | 114820 | 114930 | 111 | reverse | automatic | Ma4078I12_te930 | |
59 | man_ms1381_Ma4078I12_Musa_Grouper_255_Malign_3:LTRuncomp | Ma4078I12_te940 | 114947 | 114990 | 44 | reverse | automatic | Ma4078I12_te940 | |
60 | man_ms1396_Ma4078I12_Musa_Grouper_225_Malign_4:LTRuncomp | Ma4078I12_te950 | 114991 | 116973 | 1983 | forward | automatic | Ma4078I12_te950 | |
61 | man_ms1397_Ma4078I12_Musa_Grouper_41_Malign_4:LARD | Ma4078I12_te970 | 116975 | 117224 | 250 | forward | automatic | Ma4078I12_te970 | |
62 | man_ms1382_Ma4078I12_Musa_Grouper_255_Malign_3:LTRuncomp | Ma4078I12_te960 | 116975 | 117224 | 250 | forward | automatic | Ma4078I12_te960 | |
63 | man_ms1340_Ma4078I12_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4078I12_te1060 | 117220 | 126649 | 9430 | reverse | curated | Ma4078I12_te1060 LTR retrotransposon Thalie | cpoiron |
64 | man_ms1339_Ma4078I12_Musa_Grouper_243_Malign_4:LTRuncomp | Ma4078I12_te1050 | 120721 | 120769 | 49 | forward | automatic | | |
65 | man_ms1367_Ma4078I12_Musa_Recon_13_Malign_4:LTRuncomp | Ma4078I12_te1070 | 126650 | 132342 | 5693 | forward | automatic | Ma4078I12_te1070 | |
66 | man_ms1401_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te1100 | 132343 | 141493 | 9151 | forward | automatic | Ma4078I12_te1100 LTR retrotransposon Thalie | |
67 | man_ms1376_Ma4078I12_Musa_Grouper_253_Malign_3:LTRuncomp | Ma4078I12_te1090 | 132378 | 133677 | 1300 | forward | automatic | Ma4078I12_te1090 | |
68 | man_ms1378_Ma4078I12_Musa_Grouper_253_Malign_3:LTRuncomp | Ma4078I12_te1120 | 141498 | 141625 | 128 | forward | automatic | Ma4078I12_te1120 | |
69 | man_ms1406_Ma4078I12_Musa_Grouper_236_Malign_3:LTRcomp | Ma4078I12_te1140 | 141626 | 142030 | 405 | forward | automatic | Ma4078I12_te1140 | |
70 | man_ms1387_Ma4078I12_Musa_Recon_99_Malign_20:LTRcomp | Ma4078I12_te1130 | 141626 | 142030 | 405 | forward | automatic | Ma4078I12_te1130 | |
71 | man_ms1294_Ma4078I12_Musa_Grouper_241_Malign_3:LTRcomp | Ma4078I12_te1150 | 141626 | 142030 | 405 | reverse | automatic | Ma4078I12_te1150 | |
72 | man_ms1414_Ma4078I12_Musa_Grouper_274_Malign_3:LARD | Ma4078I12_te1160 | 142031 | 142109 | 79 | forward | automatic | Ma4078I12_te1160 | |
73 | man_ms1402_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te1170 | 142110 | 142275 | 166 | reverse | automatic | Ma4078I12_te1170 | |
74 | man_ms1403_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te1180 | 142276 | 143176 | 901 | reverse | automatic | Ma4078I12_te1180 | |
75 | man_ms1392_Ma4078I12_Musa_Recon_348_Malign_3:LTRuncomp | Ma4078I12_te1190 | 143449 | 143586 | 138 | forward | automatic | Ma4078I12_te1190 | |
76 | man_ms1379_Ma4078I12_Musa_Grouper_253_Malign_3:LTRuncomp | Ma4078I12_te1200 | 143694 | 144482 | 789 | forward | automatic | Ma4078I12_te1200 | |
77 | man_ms1404_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te1210 | 144483 | 148106 | 3624 | reverse | automatic | Ma4078I12_te1210 | |
78 | man_ms1405_Ma4078I12_Musa_Recon_164_Malign_11:LTRuncomp | Ma4078I12_te1220 | 148107 | 148170 | 64 | reverse | automatic | Ma4078I12_te1220 | |