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2008
Leptosphaeria maculans genome annotation: cDNAs databases and interfaces, Amselem, J. , Leptosphaeria 1st workshop, 1 September 2008, INRA Versailles, (2008)
GnpAnnot Project 2008, Sidibe Bocs, S., Droc G., Ruiz M., Rouard M., Roux N., Alaux M., Steinbach Samson D., Kimmel E., Pommier C., Luyten I., et al. , Séminaire Génoplante, 1-3 April 2008, Maeva, Arles, France , (2008)
Comparative genomics and database construction for Lepidoptera , d'Alençon, E., Sezutsu H., Legeai F., Quesneville H., Gordon K., Samain S., Gagneur C., Gimenez S., Cousserans F., Flutre T., et al. , 2nd Annual Arthropod Genomics Symposium, 11-13 April 2008, Kansas City, Downtown Marriott, (2008) Abstract
Comparative genomics can help to annotate tropical monocotyledon sequences, Sidibe Bocs, S., Droc G., Guignon V., Garsmeur O., and Baurens F. C. , Master APIMET / SEPMET, 14 November 2008, Montpellier SupAgro, France, (2008)
Apollo Training Sessions, Legeai, F. , 4th Meeting of the International Aphid Genomics Consortium: Pea Aphid Genome Annotation Workshop I, 14-15 July 2008, Princeton University, Princeton, NJ, (2008)
The fungal genomic annotation platform, Amselem, J. , 3rd Botrytis Genome Workshop, 25-27 September , Tenerife, Canary Islands, Spain, (2008)
The fungal genomics platform, Amselem, J. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
Plateforme génomique des insectes, Legeai, F. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
South Green genetics & genomics, Sidibe Bocs, S. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
Systemes d'annotation GnpGenome / TriAnnot, Alaux, M. , GMOD workshop, 26 Mai 2008, AgroParisTech, Paris, France, (2008)
The Apollo Genome Annotation Curation Tool (invited speaker), Amselem, J. , 3rd Tuber Genome Consortium Workshop, 27-28 November 2, University of Parma – Centro Congressi Santa Elisabetta, (2008)
2009
GNPAnnot Community Annotation System: features, qualifiers, values, Bocs, Stéphanie Sidibe, Quesneville Hadi, Tagu Denis, Lebrun Marc-Henri, Samson Delphine Steinbach, Hoede Claire, Simon Adeline, Guignon Valentin, Poiron Claire, Garsmeur Olivier, et al. , Biocuratot Meeting, (2009)
The URGI bioinformatic platform: focus on genomic annotation databases and tools, Alaux, M., Quesneville H., Steinbach Samson D., Luyten I., Amselem J., Pommier C., and Kimmel E. , PAG XVII, 01/2009, San Diego, USA, (2009)
Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop., Mbéguié-A-Mbéguié, D., Hubert O., Baurens F. C., Matsumoto T., Chillet M., Fils-Lycaon B., and Sidibé-Bocs S. , Journal of experimental botany, 2009, Volume 60, Issue 7, p.2021-34, (2009) Abstract
Oral communication: GNPAnnot - A community annotation system (CAS) for plant and bio- aggressor genomes supported by comparative genomics, Droc, G. , NGS (next generation sequencing) data analysis, 21-23 July 2009, ICRISAT, Hyderabad, India, (2009)
Oral communication: Harnessing information produced by Musa genome sequencing efforts, Rouard, M. , KUL meeting, 26 January 2009, Leuven University, Leuven, Belgium, (2009)
2010
Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana)., Baurens, Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Robert N. G., Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, and Yahiaoui Nabila , BMC plant biology, 2010, Volume 10, p.149, (2010) Abstract
Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements., d'Alençon, E., Sezutsu H., Legeai F., Permal E., Bernard-Samain S., Gimenez S., Gagneur C., Cousserans F., Shimomura M., Brun-Barale A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2010 Apr 27, Volume 107, Issue 17, p.7680-5, (2010) Abstract
Genome sequence of the pea aphid Acyrthosiphon pisum., , PLoS biology, 2010 Feb, Volume 8, Issue 2, p.e1000313, (2010) Abstract
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome., Legeai, F., Shigenobu S., Gauthier J. - P., Colbourne J., Rispe C., Collin O., Richards S., Wilson A. C. C., Murphy T., and Tagu D. , Insect molecular biology, 2010 Mar, Volume 19 Suppl 2, p.5-12, (2010) Abstract
2011
Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda., Stanojcic, Slavica, Gimenez Sylvie, Permal Emmanuelle, Cousserans François, Quesneville Hadi, Fournier Philippe, and d'Alençon Emmanuelle , PloS one, 2011, Volume 6, Issue 9, p.e24746, (2011) Abstract
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations., Rouxel, Thierry, Grandaubert Jonathan, Hane James K., Hoede Claire, van de Wouw Angela P., Couloux Arnaud, Dominguez Victoria, Anthouard Véronique, Bally Pascal, Bourras Salim, et al. , Nature communications, 2011, Volume 2, p.202, (2011) Abstract
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea., Amselem, Joelle, Cuomo Christina A., van Kan Jan A. L., Viaud Muriel, Benito Ernesto P., Couloux Arnaud, Coutinho Pedro M., de Vries Ronald P., Dyer Paul S., Fillinger Sabine, et al. , PLoS genetics, 2011 Aug, Volume 7, Issue 8, p.e1002230, (2011) Abstract
The genome of Theobroma cacao., Argout, Xavier, Salse Jerome, Aury Jean-Marc, Guiltinan Mark J., Droc Gaetan, Gouzy Jerome, Allegre Mathilde, Chaparro Cristian, Legavre Thierry, Maximova Siela N., et al. , Nature genetics, 2011 Feb, Volume 43, Issue 2, p.101-8, (2011) Abstract
High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane., Garsmeur, Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, et al. , The New phytologist, 2011 Jan, Volume 189, Issue 2, p.629-42, (2011) Abstract